Ivan Erill
Full Professor
Biological Sciences
Computer Science and Electrical Engineering
Biological Sciences Bldg BS-117
Education
Ph D Universitat Autònoma de Barcelona 2002
BS Universitat Autònoma de Barcelona 1996
About
Life is information. Information is processed both during an organism life-time and across generations by natural selection. In fact, life is probably the most complex information processing system ever created. As Robert Robbins fittingly put it, the DNA sequence of an organism is “the result of literally millions of maintenance revisions performed by the worst possible set of kludge–using, spaghetti–coding, opportunistic hackers (i.e. evolution) who delight in clever tricks like writing self–modifying code and relying upon undocumented system quirks”. As a result, deciphering molecular biology is the ultimate dream of a computer scientist.
Research Interests
My research interests lie primarily in the evolution of transcriptional regulatory networks in Bacteria, specifically on the co-evolution of transcription factors, their cognate binding sites and the regulatory networks they spawn to fulfill complex regulatory programs involved in key pathogenic processes, such as the transfer of antiobiotic resistance determinants or the creation of biofilms. My lab uses evolutionary simulations, biophysical and dynamic models, systems biology and comparative genomics approaches to probe into the evolution of transcriptional regulatory networks. My lab also works on the creation of community-oriented services for the annotation of scientific data, such as the CollecTF database (www.collectf.org) dedicated to compiling data on transcription factor-binding sites across the Bacteria domain. This work involves the design and development of biological databases, working in close collaboration with ontology development groups and core development teams at large biomedical data repositories, such as the NCBI and the EMBL-EBI.
Teaching Interests
Bioinformatics, computational biology, evolutionary biology, microbiology, biocuration, societal impacts of computers and biology
Selected Classes
- Spring 2021 BIOL 316L – Phage Genome Analysis
- BIOL 313 – Bioinformatics Intro
- Spring 2020 BIOL 615 – Systems Biology
- BIOL 415 – Systems Biology
- BIOL 316L – Phage Genome Analysis
- BIOL 313 – Bioinformatics Intro
Intellectual Contributions
Kumar, Soven Verma., Schaffer, Nicholas, Bharmal, Zainab, Mood, Quinn, Erill, Ivan, Steven, Caruso M. (2024). Complete genome and characteristics of cluster BC bacteriophage SoJo, isolated using Streptomyces mirabilis NRRL B-2400 in Columbia, MD.. e0006824 Washington, DC: Microbiology resource announcements.
Ismail, Ahmed, Saini, Tanuj, Al Qaffas, Ahmed, Erill, Ivan, Steven, Caruso M., Temple, Louise, Johnson, Allison A. (2023). Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity. 2. 15 276 Basel: Viruses.
Sanchez-Osuna, Miquel, Barbe, Jordi, Erill, Ivan. (2023). Systematic In Silico Assessment of Antimicrobial Resistance Dissemination across the Global Plasmidome. 2. 12 ANTIBIOTICS-BASEL.
Davis, Faith, Kakacek, Baily, Doorandish, Delaram, Goldwasser, Tamar, Agboha, Neyiasuo, Steven, Caruso M., Erill, Ivan. (2022). Genome Sequences of Streptomyces Bacteriophages Fabian, FlowerPower, Geostin, RetrieverFever, and Vorvolakos.. 12. 11 e0099822 Washington, DC: Microbiology resource announcements.
Park, Yvette Genie., McCarthy, Gillian Faith., Mustafa, Hadeeqa, Feild, Gemma M., Puram, Snigdha, Younes, Hager Aly., Imam, Danyah, Erill, Ivan, Steven, Caruso M. (2022). Complete Genome Sequences of Streptomyces Bacteriophages Annihilus, TonyStarch, Thiqqums, CricKo, ClubPenguin, RosaAsantewaa, and PherryCruz.. 11. 11 e0092222 Washington, DC: Microbiology resource announcements.
Mascolo, E, Adhikari, S, Steven, Caruso M., deCarvalho, Tagide, Folch Salvador, A, Serra-Sagristà, J, Young, R, Erill, Ivan, Curtis, P D. (2022). The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages: Evidence for a lytic deferment pathway.. 13 918015 Frontiers in microbiology.
Nadendla, S, Jackson, R, Munro, J, Quaglia, F, Mészáros, B, Olley, D, Hobbs, Elizabeth T., Goralski, S M., Chibucos, M, Mungall, C J., Erill, Ivan, Giglio, M G. (2022). ECO: the Evidence and Conclusion Ontology, an update for 2022.. D1. 50 D1515-D1521 Nucleic acids research.
Koert, Matthew, Lopez-Perez, Julia, Mattson, Courtney, Steven, Caruso M., Erill, Ivan. (2021). Evidence for shared ancestry between Actinobacteria and Firmicutes bacteriophages. 1 e16 Peer Community Journal.
Sánchez-Osuna, M, Cortés, P, Lee, M, Smith, Aaron, Barbé, J, Erill, Ivan. (2021). Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes.. 19. 49 11050-11066 Nucleic Acids Research.
Alvarez-Gonzalez, Sara, Erill, Ivan. (2021). Design of Machine Learning Models for the Prediction of Transcription Factor Binding Regions in Bacterial DNA. The 4th XoveTIC Conference 59. 7 3 Engineering Proceedings - MDPI.
Ramsey, J, McIntosh, B, Renfro, D, Aleksander, S A., LaBonte, S, Ross, C, Zweifel, A E., Liles, N, Farrar, S, Gill, J J., Erill, Ivan, Ades, S, Berardini, T Z., Bennett, J A., Brady, S, Britton, R, Carbon, S, Steven, Caruso M., Clements, D, Dalia, R, Defelice, M, Doyle, E L., Friedberg, I, Hughes, L, Johnson, A, Kowalski, J M., Li, D, Lovering, R C., Mans, T L., McCarthy, F, Moore, S D., Murphy, R, Paustian, T D., Perdue, S, Peterson, C N., Prüß, B M., Saha, M S., Sheehy, R R., Tansey, J T., Temple, L, Thorman, A W., Trevino, S, Vollmer, A C., Walbot, V, Willey, J, Siegele, D A., Hu, J C. (2021). Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).. 10. 17 e1009463 PLoS computational biology.
Cusick, Kathleen, Iturbide, A, Gautam, P, Price, A, Polson, S, MacDonald, M, Erill, Ivan. (2021). Enhanced copper-resistance gene repertoire in Alteromonas macleodii strains isolated from copper-treated marine coatings.. 9. 16 e0257800 PloS one.
Hobbs, Elizabeth T., Goralski, S M., Mitchell, A, Simpson, A, Leka, D, Kotey, E, Sekira, M, Munro, J B., Nadendla, S, Jackson, R, Gonzalez-Aguirre, A, Krallinger, M, Giglio, M, Erill, Ivan. (2021). ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts. Frontiers in Research Metrics and Analytics.
Adhikari, S, Erill, Ivan, Curtis, P D. (2021). Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria.. 3. 17 e1009433 PLoS genetics.
Kılıç, S, Sánchez-Osuna, M, Collado-Padilla, A, Barbé, J, Erill, Ivan. (2020). Flexible comparative genomics of prokaryotic transcriptional regulatory networks.. Suppl 5. 21 466 BMC genomics.
Sánchez-Osuna, M, Cortés, P, Llagostera, M, Barbé, J, Erill, Ivan. (2020). Exploration into the origins and mobilization of di-hydrofolate reductase genes and the emergence of clinical resistance to trimethoprim.. 11. 6 Microbial genomics.
Goulet, T L., Erill, Ivan, Ascunce, M S., Finley, S J., Javan, G T. (2020). Conceptualization of the Holobiont Paradigm as It Pertains to Corals.. 11 566968 Frontiers in physiology.
Baron, S F., Crossman, A N., Malik, S, Sidhu, P, Nehra, K, Jamdagni, P, Erill, Ivan, Temple, L M. (2020). Complete Genome Sequence of the Streptomyces-Specific Bacteriophage BRock.. 35. 9 Microbiology resource announcements.
Chen, Q, Britto, R, Erill, Ivan, Jeffery, C J., Liberzon, A, Magrane, M, Onami, J I., Robinson-Rechavi, M, Sponarova, J, Zobel, J, Verspoor, K. (2020). Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases.. 2. 18 91-103 Genomics, proteomics & bioinformatics.
Steven, Caruso M., deCarvalho, Tagide, Huynh, Anthony, Morcos, George, Kuo, Nansen, Parsa, Shabnam, Erill, Ivan. (2019). A novel genus of actinobacterial Tectiviridae. 12. 11 1134 Basel: Viruses.
Sánchez-Osuna, M, Cortés, P, Barbé, J, Erill, Ivan. (2019). Origin of the Mobile Di-Hydro-Pteroate Synthase Gene Determining Sulfonamide Resistance in Clinical Isolates.. 9 3332 Frontiers in microbiology.
Blocker, Devin, Koert, Matthew, Mattson, Courtney, Patel, Harsh, Patel, Priya, Patel, Rishit, Paudel, Hemanta, Erill, Ivan, Steven, Caruso M. (2018). Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS. 12. 7 e00993-1018 Washington, DC: Microbiology Resource Announcements.
Lee, Martin, Puglisi, Kayla M., Erill, Ivan, Steven, Caruso M. (2018). Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages. 25. 6 e00493-18 Washington, DC: Genome Announcements.
Ammari, Mais, Aryamontri, Andrew Chatr., Attrill, Helen, Bairoch, Amos, Berardini, Tanya, Blake, Judith, Chen, Qingyu, Collado-Vides, Julio, Dauga, Delphine, Dudley, Joel, Engel, Stacia, Erill, Ivan, Fey, Petra, Gibson, Richard, Hermjakob, Henning, Holliday, Gemma, Howe, Doug, Hunter, Chris, Landsman, David, Lovering, Ruth, Manthravadi, Deepa, Marchler-Bauer, Aron, Matthews, Beverley, McDonagh, Ellen, Meldal, Birgit, Micklem, Gos, Mietchen, Daniel, Mungall, Christopher, Pruitt, Kim, Rajamanickam, Vidhya Sagar., Reecy, James, Rey, Alix, Shameer, Khader, Shipitsyna, Aleksandra, Toribio, Ana Luisa, Tuli, Mary Ann, Uetz, Peter, Wittig, Ulrike, Wood, Valerie. (2018). Biocuration: Distilling data into knowledge.. 4. 16 e2002846 PLoS biology.
Erill, Ivan, Steven, Caruso M. (2018). Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2. 3. 6 e01480-17 Washington, DC: Genome Announcements.
Erill, Ivan, Steven, Caruso M., Hu, Jim. (2018). Gamifying critical reading through a genome annotation intercollegiate competition. 6. 39 18 Tested Studies for Laboratory Teaching.
Hanauer, David I., Graham, Mark J., Betancur, Laura, Bobrownicki, Aiyana, Cresawn, Steven G., Garlena, Rebecca A., Jacobs-Sera, Deborah, Kaufmann, Nancy, Pope, Welkin H., Russell, Daniel A., Jacobs, William R., Sivanathan, Viknesh, Asai, David J., Hatfull, Graham F., Steven, Caruso M., Erill, Ivan. (2017). An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. 201718188 Washington, DC: Proceedings of the National Academy of Sciences.
Sánchez-Osuna, M, Barbé, J, Erill, Ivan. (2017). Comparative genomics of the DNA damage-inducible network in the Patescibacteria.. 9. 19 3465-3474 Environmental microbiology.
Erill, Ivan, Steven, Caruso M. (2017). Bacillus cereus Group Bacteriophage Flapjack Genome Sequence. 31. 5 e00700-17 Washington, DC: Genome Announcements.
Erill, Ivan, Steven, Caruso M. (2017). Complete Genome Sequences of Three phi29-Like Bacillus cereus Group Podoviridae. 29. 5 e00701-17 Washington, DC: Genome Announcements.
Erill, Ivan, Puigvert, M, Legrand, L, Guarischi-Sousa, R, Vandecasteele, C, Setubal, J C., Genin, S, Guidot, A, Valls, M. (2017). Comparative Analysis of Ralstonia solanacearum Methylomes.. 8 504 Frontiers in plant science.
O'Neill, P K., Erill, Ivan. (2016). Parametric bootstrapping for biological sequence motifs.. 1. 17 406 BMC bioinformatics.
Erill, Ivan, Steven, Caruso M. (2016). Complete Genome Sequence of the Streptomyces Phage Nanodon.. 5. 4 Washington, DC: Genome announcements.
Erill, Ivan, Steven, Caruso M. (2016). Genome Sequence of Bacillus cereus Group Phage SalinJah. 5. 4 e00953–16 Washington, DC: Genome Announcements.
Kılıç, Sefa, Erill, Ivan. (2016). Assessment of transfer methods for comparative genomics of regulatory networks in Bacteria. (Supp.8). 17 277 BMC Bioinformatics.
Erill, Ivan, Campoy, S, Kılıç, S, Barbé, J. (2016). The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response.. 3 33 Frontiers in molecular biosciences.
Hobbs, E T., Pereira, T, O'Neill, P K., Erill, Ivan. (2016). A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data.. 11 19 Algorithms for molecular biology : AMB.
Kılıç, Sefa, Sagitova, Dinara, Wolfish, Shoshannah, Bely, Benoit, Courtot, Melanie, Ciufo, Stacy, Tatusova, Tatiana, O’Donovan, Claire, Chibucos, Marcus C., Martin, Maria J., Erill, Ivan. (2016). From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. baw055. Database (Oxford).
Sauder, Amber Brooke., Quinn, McKenzie Rea., Brouillette, Alexis, Steven, Caruso M., Cresawn, Steven, Erill, Ivan, Lewis, Lynn, Loesser-Casey, Kathryn, Pate, Morgan, Crystal, Crystal, Stockwell, Stephanie, Temple, Louise. (2016). Genomic characterization and comparison of seven Myoviridae bacteriophage infecting Bacillus thuringiensis. February 2016. 489 243-251 Virology.
Erill, Ivan, Steven, Caruso M. (2015). Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba. 5. 3 e01178–15 Washington, DC: Genome Announcements.
Erill, Ivan, Steven, Caruso M. (2015). Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore. 5. 3 e01199–15 Washington, DC: Genome Announcements.
Hagemann, I S., O'Neill, P K., Erill, Ivan, Pfeifer, J D. (2015). Diagnostic yield of targeted next generation sequencing in various cancer types: an information-theoretic approach.. 9. 208 441-7 Cancer genetics.
Erill, Ivan. (2015). Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.. 15. 197 2454-7 Journal of bacteriology.
Sanchez-Alberola, N, Campoy, S, Emerson, D, Barbé, J, Erill, Ivan. (2015). An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria.. 16. 197 2622-30 Journal of bacteriology.
Zamorano-Sánchez, David, Fong, Jiunn C., Kilic, Sefa, Erill, Ivan, Yildiz, Fitnat H. (2015). Identification and Characterization of VpsR and VpsT Binding Sites in Vibrio cholerae.. 7. 197 1221-35 Journal of bacteriology.
Patrick, O'Neill K., Robert, Forder, Erill, Ivan. (2014). Informational requirements for transcriptional regulation. 5. 21 373-384 Journal of Computational Biology.
Stringer, A M., Currenti, S, Bonocora, R P., Baranowski, C, Petrone, B L., Palumbo, M J., Reilly, A A., Zhang, Z, Erill, Ivan, Wade, J T. (2014). Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon.. 3. 196 660-71 Journal of bacteriology.
Cornish, J P., Sanchez-Alberola, N, O'Neill, P K., O'Keefe, R, Gheba, J, Erill, Ivan. (2014). Characterization of the SOS meta-regulon in the human gut microbiome.. Bioinformatics (Oxford, England).
Kiliç, S, White, E R., Sagitova, D M., Cornish, J P., Erill, Ivan. (2014). CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria.. Database issue. 42 D156-60 Nucleic acids research.
O'Neill, P K., Or, M, Erill, Ivan. (2013). scnRCA: a novel method to detect consistent patterns of translational selection in mutationally-biased genomes.. 10. 8 e76177 PloS one.
Cornish, Joseph P., Matthews, Fialelei, Thomas, Julien R., Erill, Ivan. (2012). Inference of self-regulated transcriptional networks by comparative genomics. 8 449-461 Evolutionary Bioinformatics.
Erill, Ivan. (2012). Information theory and biological sequences: insights from an evolutionary perspective. Information Theory: New Research 1-28 Hauppauge, NY: Nova Science Publishers.
Anzaldi, Laura J., Muñoz-Fernandez, Daniel, Erill, Ivan. (2012). BioWord: a sequence manipulation suite for Microsoft Word. 13 124 BMC Bioinformatics.
Sanchez-Alberola, Neus, Campoy, Susana, Barbe, Jordi, Erill, Ivan. (2012). Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes. 58. 13 BMC Genomics.
Cambray, Guillaume, Sanchez-Alberola, Neus, Campoy, Susana, Guerin, Emilie, Da Re, Sandra, Gonzalez-Zorn, Bruno, Ploy, Marie-Cecile, Barbe, Jordi, Mazel, Didier, Erill, Ivan. (2011). Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons. 1. 2 6 Mobile DNA.
Bhargava, Nidhi, Erill, Ivan. (2010). xFITOM: a generic GUI tool to search for transcription factor binding sites. 2. 5 49-51 Bioinformation.
Fox, Jesse M., Erill, Ivan. (2010). Relative Codon Adaptation: A Generic Codon Bias Index for Prediction of Gene Expression. 3. 17 185-196 DNA Research.
Guerin, Emilie, Cambray, Guillaume, Sanchez-Alberola, Neus, Campoy, Susana, Erill, Ivan, Da Re, Sandra, Gonzalez-Zorn, Bruno, Barbe, Jordi, Ploy, Marie-Cecile, Mazel, Didier. (2009). The SOS Response Controls Integron Recombination. 5930. 324 1034 Science.
Erill, Ivan, O'Neill, Michael C. (2009). A reexamination of information theory-based methods for DNA-binding site identification. 57. 10 BMC Bioinformatics.
Hessheimer, A. J., Parramon, D., Guimera, A., Erill, Ivan, Rimola, A., Garcia-Valdecasas, J. C., Villa, R., Fondevila, C.. (2009). A rapid and reliable means of assessing hepatic steatosis in vivo via electrical bioimpedance. 5. 88 716–22 Transplantation.
Erill, Ivan, Campoy, S, Barbé, J. (2007). Aeons of distress: an evolutionary perspective on the bacterial SOS response.. 6. 31 637-56 FEMS microbiology reviews.
Abella, Marc, Campoy, Susana, Erill, Ivan, Rojo, Fernando, Barbe, Jordi. (2007). Cohabitation of two different lexA regulons in Pseudomonas putida. 24. 189 8855–62 J Bacteriol.
Villa, R., Fondevila, C., Erill, Ivan, Guimera, A., Bombuy, E., Gomez-Suarez, C., Sacristan, J. C., Garcia-Valdecasas, J. C. (2006). Real-time direct measurement of human liver allograft temperature from recovery to transplantation. 3. 81 483–6 Transplantation.
Mazon, G., Campoy, S., Erill, Ivan, Barbe, J.. (2006). Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene. Pt 4. 152 1109–18 Microbiology.
Erill, Ivan, Campoy, S., Mazon, G., Barbe, J.. (2006). Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain. 1. 34 66–77 Nucleic Acids Res.
Gomez, R., Ivorra, A., Villa, R., Godignon, P., Millan, J., Erill, Ivan, Sola, A., Hotter, G., Palacios, L.. (2006). A SiC microdevice for the minimally invasive monitoring of ischemia in living tissues. 1. 8 43–9 Biomed Microdevices.
Campoy, S., Salvador, N., Cortes, P., Erill, Ivan, Barbe, J.. (2005). Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus. 15. 187 5367–75 J Bacteriol.
Abella, M., Erill, Ivan, Jara, M., Mazon, G., Campoy, S., Barbe, J.. (2004). Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum. 1. 54 212–22 Mol Microbiol.
Mazon, G., Erill, Ivan, Campoy, S., Cortes, P., Forano, E., Barbe, J.. (2004). Reconstruction of the evolutionary history of the LexA-binding sequence. Pt 11. 150 3783–95 Microbiology.
Erill, Ivan, Jara, M., Salvador, N., Escribano, M., Campoy, S., Barbe, J.. (2004). Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics. 22. 32 6617–26 Nucleic Acids Res.
Erill, Ivan, Campoy, S., Rus, J., Fonseca, L., Ivorra, A., Navarro, Z., Plaza, J. A., Aguilo, J., Barbe, J.. (2004). Development of a CMOS-compatible PCR chip: comparison of design and system strategies. 11. 14 1558–1568 Journal of Micromechanics and Microengineering.
Erill, Ivan, Escribano, M., Campoy, S., Barbe, J.. (2003). In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. 17. 19 2225–36 Bioinformatics.
Erill, Ivan, Campoy, S., Erill, N., Barbe, J., Aguilo, J.. (2003). Biochemical analysis and optimization of inhibition and adsorption phenomena in glass-silicon PCR-chips. 3. 96 685–692 Sensors and Actuators B-Chemical.
Cune, J., Erill, Ivan, Magnuson, J. K., Barbe, J.. (2002). A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms. 21. 184 6073–80 J Bacteriol.
Erill, Ivan, Villa, Rosa, Goudignon, Philippe, Fonseca, Luis, Plaza, Jose A. (2000). Silicon microsystem passivation for high-voltage applications in DNA chips. 4-5. 40 787–789 Microelectronics Reliability.
Gautam, Pratima, Erill, Ivan, Cusick, Kathleen. Linking Copper-associated signal transduction systems with their environment in marine bacteria.. 1012. 11 Microorganisms.
Research In Progress
Cusick, Kathleen, Erill, Ivan. “Intracellular Signaling in Alteromonas,” Scholarly (On-Going). Nov 1, 2017
Presentations
Lopez-Perez, Julia, Otero, Jenifer, Sanchez-Osuna, Miquel, Aranda, Jesus, Barbé, Jordi, Campoy, Susana, Erill, Ivan, Cortés, Pîlar, Llagostera, Montse. XIX Congress of the Spanish Microbiology Society. Poster. "Mutagenesis and lateral gene transfer as the molecular basis of reduced phage susceptibility mechanisms," (Jun 26, 2023).
Sanchez-Osuna, Miquel, Bierge, Paula, Pedrosa, Marc, Espasa, Mateu, Gasch, Oriol, Erill, Ivan, Pich, Oriol Quijada. ECCMID 2023. Poster. "Association between Staphylococcus aureus lineages causing bloodstream infections and clinically relevant genetic features," (Apr 17, 2023).
Otero, Jenifer, Lopez-Perez, Julia, Sanchez-Osuna, Miquel, Cabrera, Josep Maria, Campoy, Susana, Erill, Ivan, Barbé, Jordi, Cortés, Pîlar, Llagostera, Montse. Viruses of Microbes. Poster. "Mutagenesis and lateral gene transfer are involved in bacterial resistance and interference to bacteriophages," (Jul 22, 2022).
Sanchez-Osuna, Miquel, Bierge, Paula, Pedrosa, Marc, Espasa, Mateu, Gasch, Oriol, Erill, Ivan, Pich, Oriol Quijada. ECCMID 2022. Poster. "Genome-wide identification of Staphylococcus aureus genetic factors associated with increased risk of persistent bacteremia," (Apr 24, 2022).
Alvarez-Gonzalez, S (Author & Presenter), Erill, Ivan (Author). XoveTIC. Oral Presentation. "Design of Machine Learning Models for the Prediction of Transcription Factor Binding Regions in Bacterial DNA," Xunta de Galicia. (Oct 8, 2021).
Sanchez-Osuna, M (Author), Lee, M (Author), Cortes, P (Author), Smith, Aaron (Author), Barbé, J (Author), Erill, Ivan (Author & Presenter). New Approaches and Concepts in Microbiology. Oral Presentation. "Phage-like repressors orchestrate the SOS response in the Bacteroidetes," EMBO/EMBL. (Jul 7, 2021).
Hobbs, Elizabeth T. (Author), Goralski, Stephen M. (Author), Mitchell, Ashley (Author), Simpson, Andrew (Author), Dorjan, Leka (Author), Kotey, Emmanuel (Author), Sekira, Matthew (Author), Munro, James B. (Author), Nadendla, Suvarna (Author), Jackson, Rebecca (Author), Gonzalez-Agirre, Aitor (Author), Krallinger, Martin (Author), Giglio, Michelle (Author), Erill, Ivan (Author & Presenter). 11th International Conference on Biomedical Ontologies (ICBO). Oral Presentation. "Corpora as evolving entities: embedding corpora in biomedical ontologies," (Sep 16, 2020).
Erill, Ivan (Author & Presenter). 23rd Evolutionary Biology Meeting at Marseilles. Oral Presentation. "Convergent evolution of a bacterial stress response," Association pour l'Etude de l'Evolution Biologique (AEEB). (Sep 24, 2019).
Sanchez-Osuna, Miquel, Cortés, Pilar, Barbé, Jordi, Erill, Ivan. Molecular Genetics of Bacteria and Phages Meeting. Oral Presentation. "Origin of the mobile di-hydro-pteroate synthase genes conferring sulfonamide resistance," University of Wisconsin. (Aug 7, 2018).
Steven, Caruso M. (Author & Presenter), Erill, Ivan (Author). Tenth Annual NGRI SEA-Phages Symposium. Poster. "GOing forward: developing critical reading skills through an inter-campus GO annotation competition," Howard Hughes Medical Institute. (Jun 9, 2018).
Erill, Ivan (Author & Presenter), Marc, Valls (Author), Marina, Puigvert (Author), Luke, Legrand (Author), Alice, Guidot (Author), Stephanne, Genin (Author). 6th International Bacterial Wilt Symposium. Oral Presentation. "Comparative analysis of Ralstonia solanacearum methylomes," (Jul 4, 2016).
Kılıç, Sefa (Author), Sagitova, Dinara (Author), Wolfish, Soshannah (Author), Bely, Benoit (Author), Courtot, Melanie (Author), Ciufo, Stacy (Author), Tatusova, Tatiana (Author), O'Donovan, Claire (Author), Chibucos, Marcus C. (Author), Martin, Maria J. (Author), Erill, Ivan (Author & Presenter). BioCuration 2016. Oral Presentation. "From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF," International Society for BioCuration. (Apr 11, 2016).
Hobbs, Elizabeth T. (Author), Erill, Ivan (Author & Presenter). Applied Bioinformatics in the Life Sciences 2016. Poster. "Comparative analysis of stress response systems in the human gut microbiome," Vlaams Instituut voor Biotechnologie. (Mar 17, 2016).
Johnson, Allison (Author & Presenter), Lewis, Lynn (Author), Steven, Caruso M. (Author), Erill, Ivan (Author), Temple, Louise (Author). Seventh Annual NGRI SEA-Phages Symposium. Poster. "Host range of Bacillus phages. Seventh Annual SEA-Phages Symposium," Howard Hughes Medical Institute. (Jun 14, 2015).
Steven, Caruso M. (Author & Presenter), Erill, Ivan (Author & Presenter). Seventh Annual NGRI SEA-Phages Symposium. Poster. "Giving it a GO - enhancing bacteriophage genome annotation and student learning with the Gene Ontology Seventh Annual SEA-Phages Symposium," Howard Hughes Medical Institute. (Jun 14, 2015).
Sanchez-Alberola, Neus (Author), Campoy, Susana (Author), Emerson, David (Author), Barbé, Jordi (Author), Erill, Ivan (Author & Presenter). Molecular Genetics of Bacteria and Phages Meeting. Poster. "A SOS regulon under control of a non-canonical LexA-binding motif in the Betaproteobacteria," (Aug 5, 2014).
Simmons, Caleb (Author & Presenter), Stachowiak, Alexandaer (Author), Rathinam, Muruhan (Author), Erill, Ivan (Author). South Eastern Population Ecology & Evolutionary Genetics (SEPEEG) meeting. Oral Presentation. "Computational Model of the Environmental Selection of the Feed Forward Loop Network Motif," American Society of Naturalists (ASN). (Sep 28, 2013).
O'Neill, Patrick K. (Author & Presenter), Erill, Ivan (Author). Seventh q-bio Conference. Oral Presentation. "Exact Chemical Potentials for Prokaryotic Transcription Factors," National Institute of General Medical Sciences of the National Institutes of Health. (Aug 8, 2013).
Kiliç, Sefa (Author & Presenter), Erill, Ivan (Author). Great Lakes Bioinformatics Conference. Poster. "A graph-based optimization system for comparative genomics of bacterial regulatory networks," International Society for Computational Biology. (May 15, 2013).